1DD9

STRUCTURE OF THE DNAG CATALYTIC CORE

Structural Biology Knowledgebase: 1DD9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 1DD9

Classification: TRANSFERASE

Total Structure Weight: 38310.21

Macromolecule Entities
Molecule Chains Length Organism Details
DNA PRIMASE A 338 Escherichia coli EC#: 2.7.7 IUBMB
Fragment: 36 KDA CATALYTIC CORE DOMAIN
Gene Name(s): dnaG dnaP parB b3066 JW3038
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SR
Query on SR

A STRONTIUM ION
Sr
PWYYWQHXAPXYMF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.231
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 38.34 α = 90.00
b = 57.87 β = 90.00
c = 148.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-11-09
  • Released Date: 2000-04-07
  • Deposition author(s): Keck, J.L., Roche, D.D., Lynch, A.S., Berger, J.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4