1DA9

ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL

Structural Biology Knowledgebase: 1DA9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Observed: 0.216

Literature

Macromolecules
Sequence Display for 1DA9

Classification: DNA

Total Structure Weight: 2352.76

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*GP*GP*CP*CP*A)-3') A 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DM2
Query on DM2

A DOXORUBICIN
ADRIAMYCIN (Synonym)
C27 H29 N O11
AOJJSUZBOXZQNB-TZSSRYMLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Observed: 0.216
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 28.01 α = 90.00
b = 28.01 β = 90.00
c = 52.99 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1993-01-21
  • Released Date: 1993-04-15
  • Deposition author(s): Leonard, G.A., Hambley, T.W., McAuley-Hecht, K., Brown, T., Hunter, W.N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4