1D8W

L-RHAMNOSE ISOMERASE

Structural Biology Knowledgebase: 1D8W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 1D8W

Classification: ISOMERASE

Total Structure Weight: 194633.17

Macromolecule Entities
Molecule Chains Length Organism Details
L-RHAMNOSE ISOMERASE A, B, C, D 426 Escherichia coli EC#: 5.3.1.14 IUBMB
Mutation: M9M, M45M, M91M, M190M, M198M, M254M, M285M, M353M, M398M
Gene Name(s): rhaA b3903 JW5561
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.174
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 169.85 α = 90.00
b = 163.10 β = 110.32
c = 78.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-26
  • Released Date: 2000-09-27
  • Deposition author(s): Korndorfer, I.P., Matthews, B.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4