1D8E

Zinc-depleted FTase complexed with K-RAS4B peptide substrate and FPP analog.

Structural Biology Knowledgebase: 1D8E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1D8E

Classification: TRANSFERASE

Total Structure Weight: 94538.59

Macromolecule Entities
Molecule Chains Length Organism Details
FARNESYLTRANSFERASE (ALPHA SUBUNIT) A 377 Rattus norvegicus EC#: 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Gene Name(s): Fnta
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FARNESYLTRANSFERASE (BETA SUBUNIT) B 437 Rattus norvegicus EC#: 2.5.1.58 IUBMB
Gene Name(s): Fntb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
K-RAS4B PEPTIDE SUBSTRATE P 11 Homo sapiens Gene Name(s): KRAS Gene View KRAS2 RASK2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FII
Query on FII

B [(3,7,11-TRIMETHYL-DODECA-2,6,10-TRIENYLOXYCARBAMOYL)- METHYL]-PHOSPHONIC ACID
FPP ANALOG (Synonym)
C17 H30 N O5 P
JAOBYUCYSAOLHS-XGGJEREUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.196
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 171.41 α = 90.00
b = 171.41 β = 90.00
c = 69.66 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-22
  • Released Date: 2000-03-20
  • Deposition author(s): Long, S.B., Casey, P.J., Beese, L.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4