NMR Ensemble

1D83

STRUCTURE REFINEMENT OF THE CHROMOMYCIN DIMER/DNA OLIGOMER COMPLEX IN SOLUTION

Structural Biology Knowledgebase: 1D83 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: --
  • Conformers Submitted: 1
  • Selection Criteria:

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1D83

Classification: DNA

Total Structure Weight: 7156.16

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*AP*AP*GP*GP*CP*CP*TP*T)-3') A, B 8 synthetic

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CPH
Query on CPH

A, B (1S)-5-deoxy-1-O-methyl-1-C-[(2R,3S)-3,5,7,10- tetrahydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen- 2-yl]-D-xylulose
None (Synonym)
C21 H24 O9
AOCJXLJIUYHXRS-PKRZCTMMSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ERI
Query on ERI

A, B 4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L- ARABINO-HEXOPYRANOSE
C9 H16 O5
YJOQPCPEUGDGFS-VHKYIWFCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ARI
Query on ARI

A, B [O4]-ACETOXY-2,3-DIDEOXYFUCOSE
C8 H14 O4
NNWBJOVUTCFRGH-LPBLVHEISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
1GL
Query on 1GL

A, B 4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE
C7 H14 O4
CDRBUGSWTNDUSM-JWXFUTCRSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CDR
Query on CDR

A, B 2,3-DIDEOXYFUCOSE
C6 H12 O3
ZCYMCBOUZXAAJG-NGJCXOISSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: --
  • Conformers Submitted: 1
  • Selection Criteria: --

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1992-07-22
  • Released Date: 1993-07-15
  • Deposition author(s): Gao, X., Mirau, P., Patel, D.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4