1D7X

CRYSTAL STRUCTURE OF MMP3 COMPLEXED WITH A MODIFIED PROLINE SCAFFOLD BASED INHIBITOR.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.262

Literature

Macromolecules
Sequence Display for 1D7X

Classification: HYDROLASE

Total Structure Weight: 40025.90

Macromolecule Entities
Molecule Chains Length Organism Details
STROMELYSIN-1 PRECURSOR A, B 173 Homo sapiens EC#: 3.4.24.17 IUBMB
Fragment: CATALYTIC DOMAIN
Gene Name(s): MMP3 Gene View STMY1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPC
Query on SPC

A, B N-HYDROXY 1N(4-METHOXYPHENYL)SULFONYL-4-(Z,E- N-METHOXYIMINO)PYRROLIDINE-2R-CARBOXAMIDE
C13 H19 N3 O6 S
OJLWCTMBGWSVFC-JOYOIKCWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SPC IC50: 19 nM (100) BindingDB

N/A in BindingMoad
IC50: 3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.262
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 37.85 α = 90.00
b = 78.22 β = 90.00
c = 104.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-20
  • Released Date: 2000-10-23
  • Deposition author(s): Cheng, M.Y., Natchus, M.G., De, B., Almstead, N.G., Pikul, S.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance