1D54

ANTHRACYCLINE BINDING TO DNA: HIGH RESOLUTION STRUCTURE OF D(TGTACA) COMPLEXED WITH 4'-EPIADRIAMYCIN

Structural Biology Knowledgebase: 1D54 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Observed: 0.170

Literature

Macromolecules
Sequence Display for 1D54

Classification: DNA

Total Structure Weight: 2352.78

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') A 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DM6
Query on DM6

A 4'-EPIDOXORUBICIN
4'-EPIADRIAMYCIN (Synonym)
C27 H30 N O11
AOJJSUZBOXZQNB-VTZDEGQISA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Observed: 0.170
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 28.02 α = 90.00
b = 28.02 β = 90.00
c = 52.93 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1992-01-06
  • Released Date: 1993-04-15
  • Deposition author(s): Leonard, G.A., Brown, T., Hunter, W.N.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4