1D4Y

HIV-1 PROTEASE TRIPLE MUTANT/TIPRANAVIR COMPLEX

Structural Biology Knowledgebase: 1D4Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Observed: 0.174

Literature

Macromolecules
Sequence Display for 1D4Y

Classification: HYDROLASE

Total Structure Weight: 22212.47

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (HIV-1 PROTEASE) A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Mutation: Q7K, L33I, L63I
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TPV
Query on TPV

A N-(3-{(1R)-1-[(6R)-4-HYDROXY-2-OXO-6-PHENETHYL- 6-PROPYL-5,6-DIHYDRO-2H-PYRAN-3-YL]PROPYL}PHENYL)- 5-(TRIFLUOROMETHYL)-2-PYRIDINESULFONAMIDE
TIPRANAVIR (Synonym)
C31 H33 F3 N2 O5 S
SUJUHGSWHZTSEU-FYBSXPHGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TPV N/A in BindingDB
Ki: 0.008 nM  BindingMOAD
Ki: 0.008 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Observed: 0.174
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 59.78 α = 90.00
b = 87.50 β = 90.00
c = 46.46 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-06
  • Released Date: 1999-10-13
  • Deposition author(s): Watenpaugh, K.D., Janakiraman, M.N.

Revision History

  • 2012-02-22
    Type: Citation | Details: Remove et al from citation list
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4