1D3W

Crystal structure of ferredoxin 1 d15e mutant from azotobacter vinelandii at 1.7 angstrom resolution.

Structural Biology Knowledgebase: 1D3W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1D3W

Classification: ELECTRON TRANSPORT

Total Structure Weight: 12721.05

Macromolecule Entities
Molecule Chains Length Organism Details
FERREDOXIN 1 A 106 Azotobacter vinelandii Mutation: D15E
Gene Name(s): fdxA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SF4
Query on SF4

A IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
F3S
Query on F3S

A FE3-S4 CLUSTER
Fe3 S4
FCXHZBQOKRZXKS-MZMDZPPWAW
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.209
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.37 α = 90.00
b = 55.37 β = 90.00
c = 92.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-10-01
  • Released Date: 1999-10-14
  • Deposition author(s): Chen, K., Hirst, J., Camba, R., Bonagura, C.A., Stout, C.D., Burges, B.K., Armstrong, F.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4