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Formaldehyde cross-links daunorubicin and DNA efficiently: HPLC and X-RAY diffraction studies
 
 
DOI:10.2210/pdb1d33/pdb   NDB ID: DDF023
1D33
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 2376.08
     
    Molecule:5'-D(*CP*GP*CP*(G49)P*CP*G)-3'
    Polymer:1Type:polydeoxyribonucleotideLength:6
    Chains:A
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    DM1     DAUNOMYCIN C27 H29 N O10 3DLigand Explorer Link out to Ligand Expos:DM1 Link out to SuperLigands:DM1 Link out to SuperHapten:DM1
    MG     MAGNESIUM ION Mg 3DLigand Explorer Link out to Ligand Expos:MG Link out to SuperLigands:MG Link out to SuperHapten:MG
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    G49 N2-METHYL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE (parent: DG)(type: dnaLinking) C11 H16 N5 O7 P Link out to Ligand Expos:G49 Link out to SuperLigands:G49 Link out to SuperHapten:G49 2D
     
     
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Biological assembly assigned by authors and generated by PISA (software)
 
 
 
  •  
    Move Section Deposition Summary Hide
    Authors:   Wang, A.H.-J.,   Gao, Y.-G.,   Liaw, Y.-C.,   Li, Y.-K.

    Deposition:   1991-02-27
    Release:   1992-04-15
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   N/A
    View a histogram of Resolution Resolution[Å]: 1.50
    R-Value: 0.185 (obs.)
    R-Free: n/a
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 27.94 α = 90.00 
    b = 27.94 β = 90.00 
    c = 52.24 γ = 90.00