1D2F

X-RAY STRUCTURE OF MALY FROM ESCHERICHIA COLI: A PYRIDOXAL-5'-PHOSPHATE-DEPENDENT ENZYME ACTING AS A MODULATOR IN MAL GENE EXPRESSION

Structural Biology Knowledgebase: 1D2F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1D2F

Classification: TRANSFERASE

Total Structure Weight: 87864.49

Macromolecule Entities
Molecule Chains Length Organism Details
MALY PROTEIN A, B 390 Escherichia coli Gene Name(s): malY b1622 JW1614
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.201
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 57.51 α = 90.00
b = 107.19 β = 90.00
c = 256.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-09-23
  • Released Date: 2000-01-12
  • Deposition author(s): Clausen, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update