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BINDING OF THE ANTITUMOR DRUG NOGALAMYCIN AND ITS DERIVATIVES TO DNA: STRUCTURAL COMPARISON
 
 
DOI:10.2210/pdb1d22/pdb   NDB ID: DDFA15
1D22
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: DNA
    Structure Weight: 5314.33
     
    Molecule:DNA (5'-D(*(5CM)P*GP*TP*(AS)P*(5CM)P*G)-3')
    Polymer:1Type:polydeoxyribonucleotideLength:6
    Chains:A, B
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    NGU     U-58872, HYDROXY DERIVATIVE OF NOGALAMYCIN C39 H49 N O17 3DLigand Explorer Link out to Ligand Expos:NGU Link out to SuperLigands:NGU Link out to SuperHapten:NGU
     
     
  •  
    Move Section Modified Residues Hide
    Identifier Name Formula Interaction View Links
    5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE (parent: DC)(type: dnaLinking) C10 H16 N3 O7 P Link out to Ligand Expos:5CM Link out to SuperLigands:5CM Link out to SuperHapten:5CM 2D
    AS 2-DEOXY-ADENOSINE -5'-THIO-MONOPHOSPHATE (parent: DA)(type: dnaLinking) C10 H14 N5 O5 P S Link out to Ligand Expos:AS Link out to SuperLigands:AS Link out to SuperHapten:AS 2D
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Gao, Y.-G.,   Liaw, Y.-C.,   Robinson, H.,   Wang, A.H.-J.

    Deposition:   1990-08-08
    Release:   1991-07-15
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   N/A
    View a histogram of Resolution Resolution[Å]: 1.80
    R-Value: 0.196 (obs.)
    R-Free: n/a
    Space Group: P 61
    Unit Cell:
      Length [Å] Angles [°]
    a = 26.27 α = 90.00 
    b = 26.27 β = 90.00 
    c = 100.23 γ = 120.00