1D17

DNA-NOGALAMYCIN INTERACTIONS

Structural Biology Knowledgebase: 1D17 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.206

Literature

Macromolecules
Sequence Display for 1D17

Classification: DNA

Total Structure Weight: 2625.10

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*(5CM)P*GP*TP*AP*(5CM)P*G)-3') A 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NGM
Query on NGM

A NOGALAMYCIN
C39 H49 N O16
KGTDRFCXGRULNK-JYOBTZKQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5CM
Query on 5CM
A DNA LINKING C10 H16 N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.206
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 26.30 α = 90.00
b = 26.30 β = 90.00
c = 100.01 γ = 120.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1990-08-08
  • Released Date: 1991-07-15
  • Deposition author(s): Egli, M., Williams, L.D., Frederick, C.A., Rich, A.

Revision History

  • 2011-08-24
    Type: Atom nomenclature | Details: --
  • 2011-08-24
    Type: Binding sites and description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4