1D0L

THE ESCHERICHIA COLI LYTIC TRANSGLYCOSYLASE SLT35 IN COMPLEX WITH BULGECIN A

Structural Biology Knowledgebase: 1D0L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 1D0L

Classification: TRANSFERASE

Total Structure Weight: 36672.62

Macromolecule Entities
Molecule Chains Length Organism Details
35KD SOLUBLE LYTIC TRANSGLYCOSYLASE A 322 Escherichia coli EC#: 4.2.2.n1 IUBMB
Mutation: L40M, L41V
Gene Name(s): mltB b2701 JW2671
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BLG
Query on BLG

A 4-O-(4-O-SULFONYL-N-ACETYLGLUCOSAMININYL)- 5-METHYLHYDROXY-L-PROLINE-TAURINE
BULGECIN A (Synonym)
C16 H30 N3 O14 S2
RPNZWZDLNYCCIG-HMMVDTEZSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.168
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.40 α = 90.00
b = 67.79 β = 90.00
c = 97.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-09-12
  • Released Date: 2000-03-06
  • Deposition author(s): van Asselt, E.J., Kalk, K.H., Dijkstra, B.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4