1D0G

CRYSTAL STRUCTURE OF DEATH RECEPTOR 5 (DR5) BOUND TO APO2L/TRAIL

Structural Biology Knowledgebase: 1D0G SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.222

Literature

Macromolecules
Sequence Display for 1D0G

Classification: APOPTOSIS

Total Structure Weight: 102398.99

Macromolecule Entities
Molecule Chains Length Organism Details
DEATH RECEPTOR-5 R, S, T 130 Homo sapiens Fragment: EXTRACELLULAR DOMAIN RESIDUES 1-130
Gene Name(s): TNFRSF10B Gene View DR5 KILLER TRAILR2 TRICK2 ZTNFR9 UNQ160/PRO186
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
APOPTOSIS-2 LIGAND A, B, D 168 Homo sapiens Fragment: RESIDUES 114-281
Gene Name(s): TNFSF10 Gene View APO2L TRAIL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.222
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 66.82 α = 90.00
b = 111.02 β = 90.00
c = 130.81 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-09-09
  • Released Date: 1999-10-22
  • Deposition author(s): Hymowitz, S.G., Christinger, H.W., Fuh, G., O'Connell, M.P., Kelley, R.F., Ashkenazi, A., de Vos, A.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4