1D07

Hydrolytic haloalkane dehalogenase linb from sphingomonas paucimobilis UT26 with 1,3-propanediol, a product of debromidation of dibrompropane, at 2.0A resolution

Structural Biology Knowledgebase: 1D07 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.169

Literature

Macromolecules
Sequence Display for 1D07

Classification: HYDROLASE

Total Structure Weight: 33380.77

Macromolecule Entities
Molecule Chains Length Organism Details
HALOALKANE DEHALOGENASE A 296 Sphingomonas paucimobilis EC#: 3.8.1.5 IUBMB
Gene Name(s): linB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BR
Query on BR

A BROMIDE ION
Br
CPELXLSAUQHCOX-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PDO
Query on PDO

A 1,3-PROPANDIOL
C3 H8 O2
YPFDHNVEDLHUCE-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.169
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 50.23 α = 90.00
b = 71.72 β = 90.00
c = 73.32 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-09-09
  • Released Date: 2000-09-11
  • Deposition author(s): Marek, J., Vevodova, J., Damborsky, J., Smatanova, I., Svensson, L.A., Newman, J., Nagata, Y., Takagi, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4