1D00

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A 5-RESIDUE CD40 PEPTIDE

Structural Biology Knowledgebase: 1D00 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1D00

Classification: APOPTOSIS

Total Structure Weight: 156829.58

Macromolecule Entities
Molecule Chains Length Organism Details
TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 168 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: TRAF DOMAIN
Mutation: P362A, L365R
Gene Name(s): TRAF2 Gene View TRAP3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
B-CELL SURFACE ANTIGEN CD40 I, J, K..., L, M, N, O, PI, J, K, L, M, N, O, P 7 Homo sapiens Fragment: ACETYLATED 5-RESIDUE PEPTIDE
Gene Name(s): CD40 Gene View TNFRSF5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
I, J, K, L, M, N, O, P NON-POLYMER C2 H4 O --
NH2
Query on NH2
I, J, K, L, M, N, O, P NON-POLYMER H2 N --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.219
  • Space Group: R 3

Unit Cell:

Length (Å) Angle (°)
a = 111.40 α = 103.70
b = 111.40 β = 103.70
c = 111.40 γ = 103.70

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-09-07
  • Released Date: 2000-03-29
  • Deposition author(s): Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4