1CZ8

VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH AN AFFINITY MATURED ANTIBODY

Structural Biology Knowledgebase: 1CZ8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1CZ8

Classification: IMMUNE SYSTEM

Total Structure Weight: 116182.75

Macromolecule Entities
Molecule Chains Length Organism Details
VASCULAR ENDOTHELIAL GROWTH FACTOR V, W 94 Homo sapiens Fragment: RECEPTOR BINDING FRAGMENT
Gene Name(s): VEGFA Gene View VEGF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LIGHT CHAIN OF NEUTRALIZING ANTIBODY L, X 213 Mus musculus Fragment: FAB FRAGMENT
Details: MUTATED FORM OF A HUMANIZED MURINE ANTIBODY LIGHT CHAIN
HEAVY CHAIN OF NEUTRALIZING ANTIBODY H, Y 218 Mus musculus Fragment: FAB FRAGMENT
Details: MUTATED FORM OF A HUMANIZED MURINE ANTIBODY HEAVY CHAIN

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

H, Y SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.208
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 89.12 α = 90.00
b = 66.40 β = 94.70
c = 138.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-09-01
  • Released Date: 2000-03-20
  • Deposition author(s): Chen, Y., Wiesmann, C., Fuh, G., Li, B., Christinger, H.W., McKay, P., de Vos, A.M., Lowman, H.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4