1CY5

CRYSTAL STRUCTURE OF THE APAF-1 CARD

Structural Biology Knowledgebase: 1CY5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Observed: 0.169

Literature

Macromolecules
Sequence Display for 1CY5

Classification: APOPTOSIS

Total Structure Weight: 11504.82

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (APOPTOTIC PROTEASE ACTIVATING FACTOR 1) A 97 Homo sapiens Fragment: CASPASE RECRUITMENT DOMAIN
Gene Name(s): APAF1 Gene View KIAA0413
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Observed: 0.169
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 36.35 α = 90.00
b = 46.91 β = 90.00
c = 54.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-08-31
  • Released Date: 1999-09-13
  • Deposition author(s): Vaughn, D.E., Joshua-Tor, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4