1CT8

CATALYTIC ANTIBODY 7C8 COMPLEX

Structural Biology Knowledgebase: 1CT8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 1CT8

Classification: IMMUNE SYSTEM

Total Structure Weight: 95802.55

Macromolecule Entities
Molecule Chains Length Organism Details
7C8 FAB FRAGMENT; SHORT CHAIN A, C 214 Mus musculus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
7C8 FAB FRAGMENT; LONG CHAIN B, D 220 Mus musculus

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TAA
Query on TAA

B, D [4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]- PHOSPHONIC ACID MONO-[2-(2,2-DICHLORO-1-HYDROXY- ETHYLAMINO)-3-HYDROXY-1-(4-NITRO-PHENYL)- PROPYL] ESTER
C20 H21 Cl2 F3 N3 O8 P
PXDSVFRUDNCBRZ-NUJGCVRESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TAA N/A in BindingDB
Kd: 300 nM  BindingMOAD
Kd: 300 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.211
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 54.56 α = 90.00
b = 65.61 β = 95.56
c = 117.76 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-08-20
  • Released Date: 1999-11-10
  • Deposition author(s): Gigant, B., Tsumuraya, T., Fujii, I., Knossow, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values