1CJP

CONCANAVALIN A COMPLEX WITH 4'-METHYLUMBELLIFERYL-ALPHA-D-GLUCOPYRANOSIDE

Structural Biology Knowledgebase: 1CJP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.78 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 1CJP

Classification: LECTIN

Total Structure Weight: 104223.61

Macromolecule Entities
Molecule Chains Length Organism Details
CONCANAVALIN A A, B, C, D 237 Canavalia ensiformis Mutation: E151D, R155E
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MUG
Query on MUG

A, B, C, D 4-METHYLUMBELLIFERYL-ALPHA-D-GLUCOSE
C16 H18 O8
YUDPTGPSBJVHCN-JZYAIQKZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.78 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.182
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.62 α = 90.00
b = 128.71 β = 118.47
c = 82.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-10-03
  • Released Date: 1997-10-15
  • Deposition author(s): Hamodrakas, S.J., Kanellopoulos, P.N., Tucker, P.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4