1C9H

CRYSTAL STRUCTURE OF FKBP12.6 IN COMPLEX WITH RAPAMYCIN

Structural Biology Knowledgebase: 1C9H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.205

Literature

Macromolecules
Sequence Display for 1C9H

Classification: IMMUNE SYSTEM

Total Structure Weight: 12581.59

Macromolecule Entities
Molecule Chains Length Organism Details
FKBP12.6 A 107 Homo sapiens EC#: 5.2.1.8 IUBMB
Fragment: FKBP12.6
Gene Name(s): FKBP1B Gene View FKBP12.6 FKBP1L FKBP9 Gene View OTK4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RAP
Query on RAP

A RAPAMYCIN IMMUNOSUPPRESSANT DRUG
C51 H79 N O13
QFJCIRLUMZQUOT-HPLJOQBZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RAP Kd: 0.2 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.205
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 45.70 α = 90.00
b = 49.29 β = 90.00
c = 51.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-08-02
  • Released Date: 2000-08-03
  • Deposition author(s): Deivanayagam, C.C.S., Carson, M., Thotakura, A., Narayana, S.V.L., Chodavarapu, C.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4