1C8M

REFINED CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS 16 COMPLEXED WITH VP63843 (PLECONARIL), AN ANTI-PICORNAVIRAL DRUG CURRENTLY IN CLINICAL TRIALS

Structural Biology Knowledgebase: 1C8M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1C8M

Classification: Virus [ VIPERdb ]

Total Structure Weight: 95627.60

Macromolecule Entities
Molecule Chains Length Organism Details
HUMAN RHINOVIRUS 16 COAT PROTEIN 1 285 Rhinovirus a Fragment: RESIDUES 569-853
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HUMAN RHINOVIRUS 16 COAT PROTEIN 2 252 Rhinovirus a Fragment: RESIDUES 79-330
Gene Name(s):
HUMAN RHINOVIRUS 16 COAT PROTEIN 3 238 Rhinovirus a Fragment: RESIDUES 331-568
Gene Name(s):
HUMAN RHINOVIRUS 16 COAT PROTEIN 4 77 Rhinovirus a Fragment: RESIDUES 2-78
Mutation: L24I
Gene Name(s):

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
W11
Query on W11

1 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5- YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE
WIN63843 (Synonym)
C18 H18 F3 N3 O3
KQOXLKOJHVFTRN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

1 ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.219
  • Space Group: P 2 21 21

Unit Cell:

Length (Å) Angle (°)
a = 360.30 α = 90.00
b = 343.33 β = 90.00
c = 332.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-26
  • Released Date: 2000-11-22
  • Deposition author(s): Chakravarty, S., Bator, C.M., Pevear, D.C., Diana, G.D., Rossmann, M.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4