1C7N

CRYSTAL STRUCTURE OF CYSTALYSIN FROM TREPONEMA DENTICOLA CONTAINS A PYRIDOXAL 5'-PHOSPHATE COFACTOR

Structural Biology Knowledgebase: 1C7N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1C7N

Classification: TRANSFERASE

Total Structure Weight: 372208.34

Macromolecule Entities
Molecule Chains Length Organism Details
CYSTALYSIN A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 399 Treponema denticola Mutation: E88Q, E154Q, I267A
Gene Name(s): hly
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B, C, D, E, F, G, H PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.208
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.47 α = 90.00
b = 108.44 β = 90.17
c = 176.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-16
  • Released Date: 2000-07-26
  • Deposition author(s): Krupka, H.I., Huber, R., Holt, S.C., Clausen, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update