1C1X

L-PHENYLALANINE DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX WITH NAD+ AND L-3-PHENYLLACTATE

Structural Biology Knowledgebase: 1C1X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 1C1X

Classification: OXIDOREDUCTASE

Total Structure Weight: 75027.80

Macromolecule Entities
Molecule Chains Length Organism Details
L-PHENYLALANINE DEHYDROGENASE A 355 Rhodococcus sp. EC#: 1.4.1.20 IUBMB
Gene Name(s): pdh
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN (L-PHENYLALANINE DEHYDROGENASE) B 355 Rhodococcus sp. EC#: 1.4.1.20 IUBMB
Gene Name(s): pdh

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HFA
Query on HFA

A, B ALPHA-HYDROXY-BETA-PHENYL-PROPIONIC ACID
C9 H10 O3
VOXXWSYKYCBWHO-QMMMGPOBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

B ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.180
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 64.60 α = 90.00
b = 110.40 β = 90.00
c = 113.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-07-22
  • Released Date: 2000-08-30
  • Deposition author(s): Vanhooke, J.L., Thoden, J.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4