1C0K

CRYSTAL STRUCTURE ANALYSIS OF D-AMINO ACID OXIDASE IN COMPLEX WITH L-LACTATE

Structural Biology Knowledgebase: 1C0K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Observed: 0.115

Literature

Macromolecules
Sequence Display for 1C0K

Classification: OXIDOREDUCTASE

Total Structure Weight: 40490.91

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (D-AMINO ACID OXIDASE) A 363 Rhodotorula toruloides EC#: 1.4.3.3 IUBMB
Gene Name(s): DAO1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LAC
Query on LAC

A LACTIC ACID
C3 H6 O3
JVTAAEKCZFNVCJ-UWTATZPHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Observed: 0.115
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 120.67 α = 90.00
b = 120.67 β = 90.00
c = 136.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-07-16
  • Released Date: 2000-11-22
  • Deposition author(s): Umhau, S., Molla, G., Diederichs, K., Pilone, M.S., Ghisla, S., Welte, W., Pollegioni, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4