1BY2

STRUCTURE OF M2BP SCAVENGER RECEPTOR CYSTEINE-RICH DOMAIN

Structural Biology Knowledgebase: 1BY2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1BY2

Classification: EXTRACELLULAR MODULE

Total Structure Weight: 12926.38

Macromolecule Entities
Molecule Chains Length Organism Details
MAC-2 BINDING PROTEIN A 119 Homo sapiens Fragment: SCAVENGER RECEPTOR CYSTEINE-RICH (SRCR) DOMAIN
Gene Name(s): LGALS3BP Gene View M2BP
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.186
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 44.63 α = 90.00
b = 44.63 β = 90.00
c = 134.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-10-23
  • Released Date: 1999-05-18
  • Deposition author(s): Hohenester, E., Sasaki, T., Timpl, R.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4