1BVI

RIBONUCLEASE T1 (WILDTYPE) COMPLEXED WITH 2'GMP

Structural Biology Knowledgebase: 1BVI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 1BVI

Classification: HYDROLASE

Total Structure Weight: 46275.39

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (RIBONUCLEASE T1) A, B, C, D 104 Aspergillus oryzae EC#: 3.1.27.3 IUBMB
Mutation: Q25K
Details: COMPLEXED WITH GUANOSINE-2'-MONOPHOSPHATE
Gene Name(s): rntA AO090011000118
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2GP
Query on 2GP

A, B, C, D GUANOSINE-2'-MONOPHOSPHATE
C10 H14 N5 O8 P
WTIFIAZWCCBCGE-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.177
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.34 α = 90.00
b = 60.59 β = 90.00
c = 100.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-09-15
  • Released Date: 1998-09-23
  • Deposition author(s): Langhorst, U., Loris, R., Denisov, V.P., Doumen, J., Roose, P., Maes, D., Halle, B., Steyaert, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4