1BSK

ZINC DEFORMYLASE INHIBITOR COMPLEX FROM E.COLI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.167

Literature

Macromolecules
Sequence Display for 1BSK

Classification: HYDROLASE

Total Structure Weight: 19832.16

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (PEPTIDE DEFORMYLASE) A 168 Escherichia coli EC#: 3.5.1.88 IUBMB
Gene Name(s): def fms b3287 JW3248
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MLN
Query on MLN

A (S)-2-(PHOSPHONOXY)CAPROYL-L-LEUCYL-P-NITROANILIDE
C18 H28 N3 O8 P
HARXAJAHMRMERT-HOTGVXAUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MLN N/A in BindingDB
N/A in BindingMoad
Ki: 76000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.167
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 99.17 α = 90.00
b = 99.17 β = 90.00
c = 110.75 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-08-28
  • Released Date: 2000-04-15
  • Deposition author(s): Hao, B., Gong, W., Rajagopalan, P.T., Hu, Y., Pei, D., Chan, M.K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4