1BQU

CYTOKYNE-BINDING REGION OF GP130

Structural Biology Knowledgebase: 1BQU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 1BQU

Classification: SIGNALING PROTEIN

Total Structure Weight: 50298.38

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (GP130) A, B 215 Homo sapiens Fragment: CYTOKINE-BINDING REGION DOMAINS
Mutation: T1P, I2G, I3S, A211E
Details: INTERLEUKIN-6 RECEPTOR BETA FRAGMENT INTERLEUKIN 6 SIGNAL TRANSDUCER MEMBRANE GLYCOPROTEIN 130 GP130 ONCOSTATIN M RECEPTOR
Gene Name(s): IL6ST Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.221
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.48 α = 90.00
b = 132.29 β = 90.00
c = 121.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-08-18
  • Released Date: 1998-08-26
  • Deposition author(s): Bravo, J., Staunton, D., Heath, J.K., Jones, E.Y.

Revision History

  • 2011-07-13
    Type: Atom occupancy | Details: corrected occupancy
  • 2011-07-13
    Type: Non-polymer description | Details: updated chemical name/synonym
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4