1BQM

HIV-1 RT/HBY 097

Structural Biology Knowledgebase: 1BQM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.362
  • R-Value Work: 0.258

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1BQM

Classification: NUCLEOTIDYLTRANSFERASE

Total Structure Weight: 114611.80

Macromolecule Entities
Molecule Chains Length Organism Details
REVERSE TRANSCRIPTASE A 556 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Mutation: C280S
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
REVERSE TRANSCRIPTASE B 430 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Mutation: C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HBY
Query on HBY

A (S)-4-ISOPROPOXYCARBONYL-6-METHOXY-3-METHYLTHIOMETHYL- 3,4-DIHYDROQUINOXALIN-2(1H)-THIONE
HBY 097 (Synonym)
C15 H20 N2 O3 S2
GWKIPRVERALPRD-ZDUSSCGKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HBY IC50: 8 - 56 nM (98) BindingDB

N/A in BindingMoad
IC50: 45 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.362
  • R-Value Work: 0.258
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 225.20 α = 90.00
b = 69.40 β = 106.40
c = 104.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-08-17
  • Released Date: 1999-01-06
  • Deposition author(s): Hsiou, Y., Das, K., Ding, J., Arnold, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4