1BPS

MINOR CONFORMER OF A BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA IN DUPLEX DNA

Structural Biology Knowledgebase: 1BPS SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 1
  • Conformers Submitted: 1
  • Selection Criteria:

Literature

Macromolecules
Sequence Display for 1BPS

Classification: DNA

Total Structure Weight: 5802.01

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*TP*CP*(BAP)AP*CP*GP*AP*G)-3') A 9 synthetic (+)-(7R,8S,9S,10R)-7,8-DIHYDROXY-9,10-EPOXY-7,8,9,10- TETRAHYDROBENZO[A]PYRENE IS COVALENTLY BONDED TO THE EXOCYCLIC N6 AMINO GROUP OF DEOXYADENOSINE IN THE CENTER OF THE DUPLEX THROUGH TRANS ADDITION AT THE C10 OF THE EPOXIDE.
DNA (5'-D(*CP*TP*CP*GP*GP*GP*AP*CP*C)-3') B 9 synthetic BENZO[A]PYRENE DIOL EPOXIDE ADDUCT OF DA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BAP
Query on BAP

A 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
C20 H16 O3
GFANZDFKCCJYRF-NSISKUIASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 1
  • Conformers Submitted: 1
  • Selection Criteria: --

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1998-08-06
  • Released Date: 1998-08-19
  • Deposition author(s): Schwartz, J.S., Rice, J.S., Luxon, B.A., Sayer, J.M., Xie, G., Yeh, H.J.C., Liu, X., Jerina, D.M., Gorenstein, D.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4