1BPD

CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM

Structural Biology Knowledgebase: 1BPD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Observed: 0.193

Literature

Macromolecules
Sequence Display for 1BPD

Classification: NUCLEOTIDYLTRANSFERASE

Total Structure Weight: 38484.12

Macromolecule Entities
Molecule Chains Length Organism Details
DNA POLYMERASE BETA A 335 Rattus norvegicus EC#: 2.7.7.7 IUBMB 4.2.99 IUBMB
Gene Name(s): Polb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.6 Å
  • R-Value Observed: 0.193
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 39.50 α = 90.00
b = 68.17 β = 91.68
c = 75.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-04-12
  • Released Date: 1994-06-22
  • Deposition author(s): Sawaya, M.R., Pelletier, H., Kumar, A., Wilson, S.H., Kraut, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4