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HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNA
DOI:10.2210/pdb1bnk/pdb   NDB ID: PD0009
1BNK
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 31859.97
    Molecule: DNA (5'-D(*GP*AP*CP*AP*TP*GP*YRRP*TP*TP*GP*CP*CP*T)-3')
    Polymer: 1 Type: dna Length: 13
    Chains: D
    Molecule: DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3')
    Polymer: 2 Type: dna Length: 13
    Chains: E
    Molecule: PROTEIN (3-METHYLADENINE DNA GLYCOSYLASE)
    Polymer: 3 Type: protein Length: 216
    Chains: A
    EC#: 3.2.2.21   
    Organism: Homo sapiens
    Gene Names: Gene View for MPG AAG ANPG Gene View for MID1
    UniProtKB: Protein Feature View | Search PDB | P29372  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli bl21  
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    YRR
    Search 
    YRR C5 H12 N O5 P dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0009
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Lau, A.Y.,  Schaerer, O.D.,  Samson, L.,  Verdine, G.L.,  Ellenberger, T.

    Deposition:   1998-07-29
    Release:   1998-10-21
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.70
    R-Value: 0.216 (obs.)
    R-Free: 0.260
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 43.75 α = 90.00 
    b = 57.10 β = 90.00 
    c = 128.45 γ = 90.00