1BK9

PHOSPHOLIPASE A2 MODIFIED BY PBPB

Structural Biology Knowledgebase: 1BK9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.153

Literature

Macromolecules
Sequence Display for 1BK9

Classification: HYDROLASE

Total Structure Weight: 14318.11

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHOLIPASE A2 A 124 Gloydius halys EC#: 3.1.1.4 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PBP
Query on PBP

A 1-(4-BROMO-PHENYL)-ETHANONE
C8 H7 Br O
WYECURVXVYPVAT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BU1
Query on BU1

A 1,4-BUTANEDIOL
C4 H10 O2
WERYXYBDKMZEQL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.153
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 82.82 α = 90.00
b = 82.82 β = 90.00
c = 32.80 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-07-16
  • Released Date: 1999-03-02
  • Deposition author(s): Zhao, H., Tang, L., Wang, X., Lin, Z., Zhou, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4