1BIM

CRYSTALLOGRAPHIC STUDIES ON THE BINDING MODES OF P2-P3 BUTANEDIAMIDE RENIN INHIBITORS

Structural Biology Knowledgebase: 1BIM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Observed: 0.178

Literature

Macromolecules
Sequence Display for 1BIM

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 75245.70

Macromolecule Entities
Molecule Chains Length Organism Details
Renin A, B 337 Homo sapiens EC#: 3.4.23.15 IUBMB
Details: GLYCOSYLATED
Gene Name(s): REN Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0QB
Query on 0QB

(2S)-2-[(2-amino-1,3-thiazol-4-yl)methyl]- N~1~-{(1S,2S)-1-(cyclohexylmethyl)-2-hydroxy- 2-[(3R)-1,5,5-trimethyl-2-oxopyrrolidin-3- yl]ethyl}-N~4~-[2-(dimethylamino)-2-oxoethyl]- N~4~-[(1S)-1-phenylethyl]butanediamide
P2-P3 butanediamide renin inhibitor (3) (Synonym)
C36 H54 N6 O5 S
IFJSAOFSWZWPQF-SQMKVVGDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000353
Query on PRD_000353
A, B P2-P3 butanediamide renin inhibitor (3) Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Observed: 0.178
  • Space Group: P 21 3

Unit Cell:

Length (Å) Angle (°)
a = 142.90 α = 90.00
b = 142.90 β = 90.00
c = 142.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-09-27
  • Released Date: 1996-01-29
  • Deposition author(s): Tong, L.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2012-01-18
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords