1BHX

X-RAY STRUCTURE OF THE COMPLEX OF HUMAN ALPHA THROMBIN WITH THE INHIBITOR SDZ 229-357

Structural Biology Knowledgebase: 1BHX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 1BHX

Classification: SERINE PROTEASE

Total Structure Weight: 33622.73

Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA THROMBIN A 30 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ALPHA THROMBIN B 147 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
ALPHA THROMBIN F 105 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
ALPHA THROMBIN E 5 Homo sapiens EC#: 3.4.21.5 IUBMB

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
R56
Query on R56

F 5-OXO-6-PHENYLMETHANESULFONYLAMINO-HEXAHYDRO- THIAZOLO[3,2-A]PYRIDINE-3-CARBOXYLIC ACID (3- GUANIDINO-PROPYL)-AMIDE
C19 H28 N6 O4 S2
SOIIHESTBYNJRH-PMPSAXMXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
R56 Ki: 145 nM (100) BindingDB

Ki: 145 nM  BindingMOAD
Ki: 145 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.187
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 71.00 α = 90.00
b = 72.20 β = 100.70
c = 73.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-06-10
  • Released Date: 1998-11-04
  • Deposition author(s): Kallen, J.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4