1BGP

CRYSTAL STRUCTURE OF BARLEY GRAIN PEROXIDASE 1

Structural Biology Knowledgebase: 1BGP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 1BGP

Classification: OXIDOREDUCTASE

Total Structure Weight: 34544.99

Macromolecule Entities
Molecule Chains Length Organism Details
BARLEY GRAIN PEROXIDASE A 309 Hordeum vulgare EC#: 1.11.1.7 IUBMB
Mutation: R15W, R16Q, V215A, R268Q
Gene Name(s): Prx5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.192
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 71.92 α = 90.00
b = 105.06 β = 90.00
c = 40.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-07-24
  • Released Date: 1997-11-12
  • Deposition author(s): Henriksen, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4