1BDU

E. COLI THYMIDYLATE SYNTHASE COMPLEXED WITH DURD

Structural Biology Knowledgebase: 1BDU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.181

Literature

Macromolecules
Sequence Display for 1BDU

Classification: METHYLTRANSFERASE

Total Structure Weight: 30867.08

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDYLATE SYNTHASE A 265 Escherichia coli EC#: 2.1.1.45 IUBMB
Gene Name(s): thyA b2827 JW2795
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DUR
Query on DUR

A 2'-DEOXYURIDINE
C9 H12 N2 O5
MXHRCPNRJAMMIM-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
FMT
Query on FMT
A NON-POLYMER C H2 O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.181
  • Space Group: I 21 3

Unit Cell:

Length (Å) Angle (°)
a = 133.05 α = 90.00
b = 133.05 β = 90.00
c = 133.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-06-27
  • Released Date: 1998-07-01
  • Deposition author(s): Stout, T.J., Sage, C.R., Stroud, R.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values