1BCR

COMPLEX OF THE WHEAT SERINE CARBOXYPEPTIDASE, CPDW-II, WITH THE MICROBIAL PEPTIDE ALDEHYDE INHIBITOR, ANTIPAIN, AND ARGININE AT ROOM TEMPERATURE

Structural Biology Knowledgebase: 1BCR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Observed: 0.162

Literature

Macromolecules
Sequence Display for 1BCR

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 49175.00

Macromolecule Entities
Molecule Chains Length Organism Details
SERINE CARBOXYPEPTIDASE II A 263 Triticum aestivum EC#: 3.4.16.6 IUBMB
Gene Name(s): CBP2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
SERINE CARBOXYPEPTIDASE II B 160 Triticum aestivum EC#: 3.4.16.6 IUBMB
Gene Name(s): CBP2
ANTIPAIN C 4 Actinobacteria

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ARG
Query on ARG

A ARGININE
C6 H15 N4 O2
ODKSFYDXXFIFQN-BYPYZUCNSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

A ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000180
Query on PRD_000180
C Antipain Oligopeptide /
Enzyme Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Observed: 0.162
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 98.40 α = 90.00
b = 98.40 β = 90.00
c = 209.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-11-03
  • Released Date: 1996-03-08
  • Deposition author(s): Bullock, T.L., Remington, S.J.

Revision History

  • 2013-06-05
    Type: Atom nomenclature | Details: --
  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2012-09-05
    Type: Biological assembly | Details: Add polymer C - former ligand not represented as a polymer
  • 2011-12-28
    Type: Polymer description | Details: --
  • 2011-12-28
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4