1BB0

THROMBIN INHIBITORS WITH RIGID TRIPEPTIDYL ALDEHYDES


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Work: 0.157

Literature

Macromolecules
Sequence Display for 1BB0

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 35990.93

Macromolecule Entities
Molecule Chains Length Organism Details
THROMBIN A 36 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
THROMBIN B 259 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
HIRUGEN C 13 Hirudo medicinalis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0IV
Query on 0IV

B 2-{(3S)-3-[(benzylsulfonyl)amino]-2-oxopiperidin- 1-yl}-N-{(2S)-1-[(3R)-1-carbamimidoylpiperidin- 3-yl]-3-oxopropan-2-yl}acetamide
CVS1694 (Synonym)
C23 H34 N6 O5 S
DATYERRDSFNBDN-AABGKKOBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0IV IC50: 28.8 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
C NON-POLYMER C2 H4 O --
TYS
Query on TYS
C L-PEPTIDE LINKING C9 H11 N O6 S TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Observed:
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 71.14 α = 90.00
b = 72.26 β = 100.70
c = 72.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-04-28
  • Released Date: 1999-04-27
  • Deposition author(s): Krishnan, R., Zhang, E., Hakansson, K., Arni, R.K., Tulinsky, A., Lim-Wilby, M.S.L., Levy, O.E., Semple, J.E., Brunck, T.K.

Revision History

  • 2008-03-24
    Type: Version format compliance
  • 2011-07-13
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance
  • 2011-07-27
    Type: Database references
  • 2012-12-12
    Type: Other