STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
DOI:10.2210/pdb1b8i/pdb   NDB ID: PD0042
1B8I
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 26730.32
    Molecule: DNA (5'-D(*GP*TP*CP*GP*CP*CP*AP*TP*AP*AP*AP*TP*CP*AP*C)-3')
    Polymer: 1 Type: dna Length: 15
    Chains: C
    Fragment: UBX/EXD CONSENSUS BINDING SITE
    Molecule: DNA (5'-D(*AP*CP*GP*TP*GP*AP*TP*TP*TP*AP*TP*GP*GP*CP*G)-3')
    Polymer: 2 Type: dna Length: 15
    Chains: D
    Fragment: UBX/EXD CONSENSUS BINDING SITE
    Molecule: PROTEIN (ULTRABITHORAX HOMEOTIC PROTEIN IV)
    Polymer: 3 Type: protein Length: 81
    Chains: A
    Fragment: YPWM MOTIF AND HOMEODOMAIN
    Mutation: C139S
    Organism: Drosophila melanogaster
    Gene Names: Ubx CG10388
    UniProtKB: Protein Feature View | Search PDB | P83949  
    Molecule: PROTEIN (HOMEOBOX PROTEIN EXTRADENTICLE)
    Polymer: 4 Type: protein Length: 63
    Chains: B
    Fragment: HOMEODOMAIN
    Organism: Drosophila melanogaster
    Gene Names: exd CG8933
    UniProtKB: Protein Feature View | Search PDB | P40427  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly Expression System: Escherichia coli  
    Polymer: 4
    Scientific Name: Drosophila melanogaster   Taxonomy   Common Name: Fruit fly Expression System: Escherichia coli  
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:PD0042
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Passner, J.M.,  Ryoo, H.-D.,  Shen, L.,  Mann, R.S.,  Aggarwal, A.K.

    Deposition:   1999-02-01
    Release:   1999-04-12
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   2.40
    R-Value: 0.224 (work)
    R-Free: 0.304
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 69.43 α = 90.00 
    b = 69.43 β = 90.00 
    c = 100.70 γ = 90.00