1B80

REC. LIGNIN PEROXIDASE H8 OXIDATIVELY PROCESSED

Structural Biology Knowledgebase: 1B80 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 1B80

Classification: OXIDOREDUCTASE

Total Structure Weight: 76387.48

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (RECOMBINANT LIGNIN PEROXIDASE H8) A, B 351 Phanerochaete chrysosporium EC#: 1.11.1.14 IUBMB
Fragment: MATURE PROTEIN PLUS 7-RESIDUE PROSEQUENCE
Mutation: R114A
Details: HEME CONTAINING, TRP171 IS HYDROXYLATED AT ITS CBETA ATOM
Gene Name(s): LPOA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
HTR
Query on HTR
A, B L-PEPTIDE LINKING C11 H12 N2 O3 TRP

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.73 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.170
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 73.48 α = 90.00
b = 94.93 β = 90.00
c = 230.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-02-03
  • Released Date: 1999-02-09
  • Deposition author(s): Blodig, W., Smith, A.T., Doyle, W.A., Piontek, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4