1B3D

STROMELYSIN-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.256

Literature

Macromolecules
Sequence Display for 1B3D

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 39709.57

Macromolecule Entities
Molecule Chains Length Organism Details
STROMELYSIN-1 A, B 173 Homo sapiens EC#: 3.4.24.17 IUBMB
Details: STROMELYSIN-1 COMPLEX WITH HYDROXAMATE-PHOSPHINAMIDE INHIBITOR
Gene Name(s): MMP3 Gene View STMY1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
S27
Query on S27

B N-[[2-METHYL-4-HYDROXYCARBAMOYL]BUT-4-YL- N]-BENZYL-P-[PHENYL]-P-[METHYL]PHOSPHINAMID
C20 H27 N2 O3 P
KGUVBHLPMGERAT-NIYFSFCBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
S27 IC50: 24 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.263
  • R-Value Work: 0.256
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 37.90 α = 90.00
b = 78.80 β = 90.00
c = 105.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-12-09
  • Released Date: 1999-12-10
  • Deposition author(s): Chen, L., Rydel, T.J., Dunaway, C.M., Pikul, S., Dunham, K.M., Gu, F., Barnett, B.L.

Revision History

  • 2008-04-26
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2012-05-02
    Type: Structure summary