NMR Ensemble

1AXL

SOLUTION CONFORMATION OF THE (-)-TRANS-ANTI-[BP]DG ADDUCT OPPOSITE A DELETION SITE IN DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG), NMR, 6 STRUCTURES

Structural Biology Knowledgebase: 1AXL SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 6
  • Conformers Submitted: 6
  • Selection Criteria: All Conformers Were Included

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1AXL

Classification: DNA

Total Structure Weight: 6723.61

Macromolecule Entities
Molecule Chains Length Organism Details
DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG) A 11 synthetic D(C1-C2-A3-T4-C5-[BP]G6-C7-T8-A9-C10-C11) D (G11-G12-T13-A14-G15--G16-A17-T18-G19-G20) WITH CC10 ATOM OF BP LINKED TO N2 ATOM OF DG6
DNA DUPLEX D(CCATC-[BP]G-CTACC)D(GGTAG--GATGG) B 10 synthetic D(C1-C2-A3-T4-C5-[BP]G6-C7-T8-A9-C10-C11) D (G11-G12-T13-A14-G15--G16-A17-T18-G19-G20) WITH CC10 ATOM OF BP LINKED TO N2 ATOM OF DG6

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BAP
Query on BAP

A 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE
C20 H16 O3
GFANZDFKCCJYRF-NSISKUIASA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 6
  • Conformers Submitted: 6
  • Selection Criteria: ALL CONFORMERS WERE INCLUDED

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1997-10-16
  • Released Date: 1998-07-01
  • Deposition author(s): Feng, B., Gorin, A.A., Kolbanovskiy, A., Hingerty, B.E., Geacintov, N.E., Broyde, S., Patel, D.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4