1AVL

CRYSTAL STRUCTURES OF THE COPPER-CONTAINING AMINE OXIDASE FROM ARTHROBACTER GLOBIFORMIS IN THE HOLO-AND APO-FORMS: IMPLICATIONS FOR THE BIOGENESIS OF TOPA QUINONE

Structural Biology Knowledgebase: 1AVL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.150

Literature

Macromolecules
Sequence Display for 1AVL

Classification: OXIDOREDUCTASE

Total Structure Weight: 70816.98

Macromolecule Entities
Molecule Chains Length Organism Details
AMINE OXIDASE A 638 Arthrobacter globiformis EC#: 1.4.3.21 IUBMB
Mutation: Y382X
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPQ
Query on TPQ
A L-PEPTIDE LINKING C9 H9 N O5 TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.150
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 158.20 α = 90.00
b = 64.10 β = 112.70
c = 92.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-09-17
  • Released Date: 1998-03-18
  • Deposition author(s): Wilce, M.C.J., Guss, J.M., Freeman, H.C.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4