1AT5

HEN EGG WHITE LYSOZYME WITH A SUCCINIMIDE RESIDUE

Structural Biology Knowledgebase: 1AT5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.182

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1AT5

Classification: HYDROLASE

Total Structure Weight: 14983.24

Macromolecule Entities
Molecule Chains Length Organism Details
LYSOZYME A 129 Gallus gallus EC#: 3.2.1.17 IUBMB
Mutation: D101X, G102X
Details: SUCCINIMIDE AT RESIDUE 101
Gene Name(s): LYZ Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
SNN
Query on SNN
A L-PEPTIDE LINKING C4 H6 N2 O2 ASN
ACY
Query on ACY
A NON-POLYMER C2 H4 O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.182
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.61 α = 90.00
b = 78.61 β = 90.00
c = 38.78 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-08-18
  • Released Date: 1998-02-25
  • Deposition author(s): Noguchi, S., Miyawaki, K., Satow, Y.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4