1AL8

THREE-DIMENSIONAL STRUCTURE OF GLYCOLATE OXIDASE WITH BOUND ACTIVE-SITE INHIBITORS

Structural Biology Knowledgebase: 1AL8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1AL8

Classification: FLAVOPROTEIN

Total Structure Weight: 40046.39

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCOLATE OXIDASE A 359 Spinacia oleracea EC#: 1.1.3.15 IUBMB
Details: THE STRUCTURE DESCRIBED IS A COMPLEX OF GLYCOLATE OXIDASE WITH FMN AND AN INHIBITOR
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DHP
Query on DHP

A 3-DECYL-2,5-DIOXO-4-HYDROXY-3-PYRROLINE
C14 H23 N O3
LXIDJQZEXUQBGG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DHP N/A in BindingDB
Ki: 4800 nM  BindingMOAD
Ki: 4800 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.194
  • Space Group: I 4
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 95.40 α = 90.00
b = 95.40 β = 90.00
c = 93.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-06-12
  • Released Date: 1997-09-17
  • Deposition author(s): Stenberg, K., Lindqvist, Y.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4