1AJJ

LDL RECEPTOR LIGAND-BINDING MODULE 5, CALCIUM-COORDINATING

Structural Biology Knowledgebase: 1AJJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1AJJ

Classification: RECEPTOR

Total Structure Weight: 4205.58

Macromolecule Entities
Molecule Chains Length Organism Details
LOW-DENSITY LIPOPROTEIN RECEPTOR A 37 Homo sapiens Fragment: LIGAND-BINDING DOMAIN, FIFTH REPEAT
Gene Name(s): LDLR Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.209
  • Space Group: H 3

Unit Cell:

Length (Å) Angle (°)
a = 53.45 α = 90.00
b = 53.45 β = 90.00
c = 26.76 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-05-04
  • Released Date: 1997-07-07
  • Deposition author(s): Fass, D., Blacklow, S.C., Kim, P.S., Berger, J.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4