1AD4

DIHYDROPTEROATE SYNTHETASE COMPLEXED WITH OH-CH2-PTERIN-PYROPHOSPHATE FROM STAPHYLOCOCCUS AUREUS

Structural Biology Knowledgebase: 1AD4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.176

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1AD4

Classification: TRANSFERASE

Total Structure Weight: 59401.50

Macromolecule Entities
Molecule Chains Length Organism Details
DIHYDROPTEROATE SYNTHETASE A, B 266 Staphylococcus aureus EC#: 2.5.1.15 IUBMB
Gene Name(s): folP dpsA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HH2
Query on HH2

A 6-HYDROXYMETHYLPTERIN-DIPHOSPHATE
[PTERIN-6-YL METHANYL]-PHOSPHONOPHOSPHATE (Synonym)
C7 H9 N5 O8 P2
AMDUVUKDRBIVAH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.176
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 65.75 α = 90.00
b = 42.14 β = 106.06
c = 99.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-02-20
  • Released Date: 1998-04-29
  • Deposition author(s): Oefner, C., Kostrewa, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4